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I am working with DepmixS4 package in R. I was able to fit my NHMM by using below code:

NHMM <- depmix(list(Clust1.North~1,Clust2.North~1,Clust1.South~1,Clust2.South~1), nstates = 4, family=list(gaussian(),gaussian(),gaussian(),gaussian()), data = NHMM.Data, transition = ~Clust1.temp+Clust2.temp)

NHMM.fit<- fit(NHMM)

I would like to plot the distribution of each state of my model.

Any help will be appreciated!

Burcu Tezcan
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  • It's easier to help you if you include a simple [reproducible example](https://stackoverflow.com/questions/5963269/how-to-make-a-great-r-reproducible-example) with sample input and desired output that can be used to test and verify possible solutions. – MrFlick Sep 11 '21 at 05:18
  • It is also not clear what you mean by plotting the distribution of each state. Do you mean the conditional distribution of the observed variables (the "Clust" variables), or do you want to visualise the frequency of each state over the time points? – mspeek Nov 15 '21 at 23:10

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