Create a manhattan plot in r

Question

This is my code thus far, but it keeps saying "...' used in an incorrect context? Any suggestions?

library(qqman)
manhattan(
pvalues_file,
chr = "CHR",
bp = "BP",
p = "P",
snp = "SNP",
col = c("gray10", "gray60"),
chrlabs = NULL,
suggestiveline = -log10(1e-05),
genomewideline = -log10(5e-08),
highlight = NULL,
logp = TRUE,
annotatePval = NULL,
annotateTop = TRUE,
...
)

It's easier to help you if you include a simple [reproducible example](https://stackoverflow.com/questions/5963269/how-to-make-a-great-r-reproducible-example) with sample input that can be used to test and verify possible solutions. — MrFlick, Dec 09 '21 at 04:17

score 1 · Answer 1 · answered Dec 09 '21 at 01:47

1

You don't need to type .... ... in the function definition just means that there are other arguments that you can chuck in there. If you don't want to, don't.

answered Dec 09 '21 at 01:47

Daniel V

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23

I tried removing it, but my manhattan plot still does not generate. – nick1 Dec 09 '21 at 02:20
1

I assume the error message is different. What is it this time? – Daniel V Dec 09 '21 at 03:13

Create a manhattan plot in r

1 Answers1