I am trying to summarize our detection data in a way that I can easily see when an animal moves from one pool to another. Here is an example of one animal that I track
tibble [22 x 13] (S3: tbl_df/tbl/data.frame)
$ Receiver : chr [1:22] "VR2Tx-480679" "VR2Tx-480690" "VR2Tx-480690" "VR2Tx-480690" ...
$ Transmitter : chr [1:22] "A69-9001-12418" "A69-9001-12418" "A69-9001-12418" "A69-9001-12418" ...
$ Species : chr [1:22] "PDFH" "PDFH" "PDFH" "PDFH" ...
$ LocalDATETIME: POSIXct[1:22], format: "2021-05-28 07:16:52" ...
$ StationName : chr [1:22] "1405U" "1406U" "1406U" "1406U" ...
$ LengthValue : num [1:22] 805 805 805 805 805 805 805 805 805 805 ...
$ WeightValue : num [1:22] 8.04 8.04 8.04 8.04 8.04 8.04 8.04 8.04 8.04 8.04 ...
$ Sex : chr [1:22] "NA" "NA" "NA" "NA" ...
$ Translocated : num [1:22] 0 0 0 0 0 0 0 0 0 0 ...
$ Pool : num [1:22] 16 16 16 16 16 16 16 16 16 16 ...
$ DeployDate : POSIXct[1:22], format: "2018-06-05" ...
$ Latitude : num [1:22] 41.6 41.6 41.6 41.6 41.6 ...
$ Longitude : num [1:22] -90.4 -90.4 -90.4 -90.4 -90.4 ...
I want to add columns that would allow me to summarize this data in a way that I would have the start date of when an animal was in a pool and when the animal moved to a different pool it would have the end date of when it exits.
Ex: Enters Pool 19 on 1/1/22, next detected in Pool 20 on 1/2/22, so there would be columns that say fish entered and exited Pool 19 on 1/1/22 and 1/2/22. I have shared an Excel file example of what I am trying to do. I would like to code upstream movement with a 1 and downstream movement with 0.
I have millions of detections and hundreds of animals that I monitor so I am trying to find a way to look at passages for each animal. Thank you!
Here is my dataset using dput:
structure(list(Receiver = c("VR2Tx-480679", "VR2Tx-480690", "VR2Tx-480690",
"VR2Tx-480690", "VR2Tx-480690", "VR2Tx-480690", "VR2Tx-480690",
"VR2Tx-480690", "VR2Tx-480690", "VR2Tx-480690", "VR2Tx-480690",
"VR2Tx-480690", "VR2Tx-480690", "VR2Tx-480692", "VR2Tx-480695",
"VR2Tx-480695", "VR2Tx-480713", "VR2Tx-480713", "VR2Tx-480702",
"VR100", "VR100", "VR100"), Transmitter = c("A69-9001-12418",
"A69-9001-12418", "A69-9001-12418", "A69-9001-12418", "A69-9001-12418",
"A69-9001-12418", "A69-9001-12418", "A69-9001-12418", "A69-9001-12418",
"A69-9001-12418", "A69-9001-12418", "A69-9001-12418", "A69-9001-12418",
"A69-9001-12418", "A69-9001-12418", "A69-9001-12418", "A69-9001-12418",
"A69-9001-12418", "A69-9001-12418", "A69-9001-12418", "A69-9001-12418",
"A69-9001-12418"), Species = c("PDFH", "PDFH", "PDFH", "PDFH",
"PDFH", "PDFH", "PDFH", "PDFH", "PDFH", "PDFH", "PDFH", "PDFH",
"PDFH", "PDFH", "PDFH", "PDFH", "PDFH", "PDFH", "PDFH", "PDFH",
"PDFH", "PDFH"), LocalDATETIME = structure(c(1622186212, 1622381700,
1622384575, 1622184711, 1622381515, 1622381618, 1622381751, 1622381924,
1622382679, 1622383493, 1622384038, 1622384612, 1622183957, 1622381515,
1626905954, 1626905688, 1622971975, 1622970684, 1626929618, 1624616880,
1626084540, 1626954660), tzone = "UTC", class = c("POSIXct",
"POSIXt")), StationName = c("1405U", "1406U", "1406U", "1406U",
"1406U", "1406U", "1406U", "1406U", "1406U", "1406U", "1406U",
"1406U", "1406U", "1404L", "1401D", "1401D", "14Aux2", "14Aux2",
"15.Mid.Wall", "man_loc", "man_loc", "man_loc"), LengthValue = c(805,
805, 805, 805, 805, 805, 805, 805, 805, 805, 805, 805, 805, 805,
805, 805, 805, 805, 805, 805, 805, 805), WeightValue = c(8.04,
8.04, 8.04, 8.04, 8.04, 8.04, 8.04, 8.04, 8.04, 8.04, 8.04, 8.04,
8.04, 8.04, 8.04, 8.04, 8.04, 8.04, 8.04, 8.04, 8.04, 8.04),
Sex = c("NA", "NA", "NA", "NA", "NA", "NA", "NA", "NA", "NA",
"NA", "NA", "NA", "NA", "NA", "NA", "NA", "NA", "NA", "NA",
"NA", "NA", "NA"), Translocated = c(0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0), Pool = c(16,
16, 16, 16, 16, 16, 16, 16, 16, 16, 16, 16, 16, 16, 16, 16,
16, 16, 16, 14, 14, 16), DeployDate = structure(c(1528156800,
1528156800, 1528156800, 1528156800, 1528156800, 1528156800,
1528156800, 1528156800, 1528156800, 1528156800, 1528156800,
1528156800, 1528156800, 1528156800, 1528156800, 1528156800,
1528156800, 1528156800, 1528156800, 1528156800, 1528156800,
1528156800), tzone = "UTC", class = c("POSIXct", "POSIXt"
)), Latitude = c(41.57471, 41.5758, 41.5758, 41.5758, 41.5758,
41.5758, 41.5758, 41.5758, 41.5758, 41.5758, 41.5758, 41.5758,
41.5758, 41.57463, 41.5731, 41.5731, 41.57469, 41.57469,
41.57469, 41.57469, 41.57469, 41.57469), Longitude = c(-90.39944,
-90.39793, -90.39793, -90.39793, -90.39793, -90.39793, -90.39793,
-90.39793, -90.39793, -90.39793, -90.39793, -90.39793, -90.39793,
-90.39984, -90.40391, -90.40391, -90.40462, -90.40462, -90.40462,
-90.40462, -90.40462, -90.40462)), row.names = c(NA, -22L
), class = c("tbl_df", "tbl", "data.frame"))
> dput(T12418)
structure(list(Receiver = c("VR2Tx-480679", "VR2Tx-480690", "VR2Tx-480690",
"VR2Tx-480690", "VR2Tx-480690", "VR2Tx-480690", "VR2Tx-480690",
"VR2Tx-480690", "VR2Tx-480690", "VR2Tx-480690", "VR2Tx-480690",
"VR2Tx-480690", "VR2Tx-480690", "VR2Tx-480692", "VR2Tx-480695",
"VR2Tx-480695", "VR2Tx-480713", "VR2Tx-480713", "VR2Tx-480702",
"VR100", "VR100", "VR100"), Transmitter = c("A69-9001-12418",
"A69-9001-12418", "A69-9001-12418", "A69-9001-12418", "A69-9001-12418",
"A69-9001-12418", "A69-9001-12418", "A69-9001-12418", "A69-9001-12418",
"A69-9001-12418", "A69-9001-12418", "A69-9001-12418", "A69-9001-12418",
"A69-9001-12418", "A69-9001-12418", "A69-9001-12418", "A69-9001-12418",
"A69-9001-12418", "A69-9001-12418", "A69-9001-12418", "A69-9001-12418",
"A69-9001-12418"), Species = c("PDFH", "PDFH", "PDFH", "PDFH",
"PDFH", "PDFH", "PDFH", "PDFH", "PDFH", "PDFH", "PDFH", "PDFH",
"PDFH", "PDFH", "PDFH", "PDFH", "PDFH", "PDFH", "PDFH", "PDFH",
"PDFH", "PDFH"), LocalDATETIME = structure(c(1622186212, 1622381700,
1622384575, 1622184711, 1622381515, 1622381618, 1622381751, 1622381924,
1622382679, 1622383493, 1622384038, 1622384612, 1622183957, 1622381515,
1626905954, 1626905688, 1622971975, 1622970684, 1626929618, 1624616880,
1626084540, 1626954660), class = c("POSIXct", "POSIXt"), tzone = "UTC"),
StationName = c("1405U", "1406U", "1406U", "1406U", "1406U",
"1406U", "1406U", "1406U", "1406U", "1406U", "1406U", "1406U",
"1406U", "1404L", "1401D", "1401D", "14Aux2", "14Aux2", "15.Mid.Wall",
"man_loc", "man_loc", "man_loc"), LengthValue = c(805, 805,
805, 805, 805, 805, 805, 805, 805, 805, 805, 805, 805, 805,
805, 805, 805, 805, 805, 805, 805, 805), WeightValue = c(8.04,
8.04, 8.04, 8.04, 8.04, 8.04, 8.04, 8.04, 8.04, 8.04, 8.04,
8.04, 8.04, 8.04, 8.04, 8.04, 8.04, 8.04, 8.04, 8.04, 8.04,
8.04), Sex = c("NA", "NA", "NA", "NA", "NA", "NA", "NA",
"NA", "NA", "NA", "NA", "NA", "NA", "NA", "NA", "NA", "NA",
"NA", "NA", "NA", "NA", "NA"), Translocated = c(0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0),
Pool = c(16, 16, 16, 16, 16, 16, 16, 16, 16, 16, 16, 16,
16, 16, 16, 16, 16, 16, 16, 14, 14, 16), DeployDate = structure(c(1528156800,
1528156800, 1528156800, 1528156800, 1528156800, 1528156800,
1528156800, 1528156800, 1528156800, 1528156800, 1528156800,
1528156800, 1528156800, 1528156800, 1528156800, 1528156800,
1528156800, 1528156800, 1528156800, 1528156800, 1528156800,
1528156800), class = c("POSIXct", "POSIXt"), tzone = "UTC"),
Latitude = c(41.57471, 41.5758, 41.5758, 41.5758, 41.5758,
41.5758, 41.5758, 41.5758, 41.5758, 41.5758, 41.5758, 41.5758,
41.5758, 41.57463, 41.5731, 41.5731, 41.57469, 41.57469,
41.57469, 41.57469, 41.57469, 41.57469), Longitude = c(-90.39944,
-90.39793, -90.39793, -90.39793, -90.39793, -90.39793, -90.39793,
-90.39793, -90.39793, -90.39793, -90.39793, -90.39793, -90.39793,
-90.39984, -90.40391, -90.40391, -90.40462, -90.40462, -90.40462,
-90.40462, -90.40462, -90.40462)), class = c("tbl_df", "tbl",
"data.frame"), row.names = c(NA, -22L))