Based on Thorbjørn Ravn Andersens suggestion I wrote some code that makes this work
Add the following early in the main method and it is now possible to set the log level from the comand line. This have been tested in a project of mine but I'm new to log4j and might have made some mistake. If so please correct me.
Logger.getRootLogger().setLevel(Level.WARN);
HashMap<String,Level> logLevels=new HashMap<String,Level>();
logLevels.put("ALL",Level.ALL);
logLevels.put("TRACE",Level.TRACE);
logLevels.put("DEBUG",Level.DEBUG);
logLevels.put("INFO",Level.INFO);
logLevels.put("WARN",Level.WARN);
logLevels.put("ERROR",Level.ERROR);
logLevels.put("FATAL",Level.FATAL);
logLevels.put("OFF",Level.OFF);
for(String name:System.getProperties().stringPropertyNames()){
String logger="log4j.logger.";
if(name.startsWith(logger)){
String loggerName=name.substring(logger.length());
String loggerValue=System.getProperty(name);
if(logLevels.containsKey(loggerValue))
Logger.getLogger(loggerName).setLevel(logLevels.get(loggerValue));
else
Logger.getRootLogger().warn("unknown log4j logg level on comand line: "+loggerValue);
}
}