retrieving email message expanding attachments doesn't retrieve referenceattachments (that we upload using upload & share from onedrive) If an email contains only reference attachments the list would return empty
GET /users/{id | userPrincipalName}/messages/{id}/attachments
I tried following request
GET /users/{id | userPrincipalName}/messages/{id}?$expand=attachments
The above request gets all the attachments however reference attachments are not included in the result.