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I want to rebuild the Ruvseq model based on the "RUVseq" manual in Bioconductor. But, I can't use these newSeqExpressionSet, plotRLE, plotPCA, and library(betweenLaneNormalization)functions. every time it gives: "could not find function newSeqExpressionSet"

I used R 4.2.2 and loaded these libraries:

library(edgeR) library(RUVSeq) library(EDASeq) library(zebrafishRNASeq)

Ahmad
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  • Welcome to StackOverflow. Can you make your post [reproducible](https://stackoverflow.com/questions/5963269/how-to-make-a-great-r-reproducible-example) and include any code you've written so far (even if it results in an error) with your dataset (or an example dataset)? – jrcalabrese Nov 30 '22 at 15:36
  • You haven't added any data to your post and the only code you've added just loads packages. Can you look at [this resource](https://stackoverflow.com/questions/5963269/how-to-make-a-great-r-reproducible-example) to see examples of reproducible examples? – jrcalabrese Dec 02 '22 at 14:19
  • Welcome to StackOverflow. I think you have not installed the package appropriately. RUVseq has some perquisites, you have to pay attention to warnings and errors after loading the package. – Nikoo_Ebrahimi Dec 03 '22 at 07:56

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