this is the command i am running through os.system it is working absolutely fine
**cmd = "STAR --runMode genomeGenerate --genomeDir {output_dir} --genomeFastaFiles {input_file}" + " " + "2>&1 | tee /path/to/textfile"**
but when i try running it using subprocess.run or popen or anything, it is not working
i tried it using
**cmd = "STAR --runMode genomeGenerate --genomeDir {output_dir} --genomeFastaFiles {input_file}" + " "**
it was working with subprocess popen or run but i am expecting it to run like
**cmd = "STAR --runMode genomeGenerate --genomeDir {output_dir} --genomeFastaFiles {input_file}" + " " + "2>&1 | tee /path/to/textfile"**
using subprocess without using shell = True