I want to run a tool (XYZ) which I downloaded from GitHub repo. Here is the docker file:
FROM rocker/r-ver:3.5.0
#Use rocker from well maininted dockerhub as the parent image, will set up as a debian system
#debian:stretch
LABEL software.name="XYZ"
LABEL software.version="XYZ v1.0.0"
LABEL software.description="data_analysis"
LABEL container.base.image="debian"
LABEL tags="calls"
#Install necessary tools onto debian system
run apt-get update
run apt-get --yes install vim
run apt-get --yes install less
run apt-get --yes install parallel
run apt-get --yes install python-pip
run apt-get --yes install curl
run apt-get --yes install libpq-dev
#Install necessary R packages used in overlap script
RUN R -e "install.packages('devtools', repos='http://cran.us.r-project.org/')"
RUN R -e "install.packages('optparse', repos='http://cran.us.r-project.org/')"
RUN R -e "install.packages('VennDiagram', repos='http://cran.us.r-project.org/')"
RUN R -e "install.packages('gridExtra', repos='http://cran.us.r-project.org/')"
RUN R -e "install.packages('dplyr', repos='http://cran.us.r-project.org/')"
RUN R -e "install.packages('readr', repos='http://cran.us.r-project.org/')"
RUN R -e "install.packages('DBI', repos='http://cran.us.r-project.org/')"
RUN R -e "install.packages('RPostgres', repos='http://cran.us.r-project.org/')"
RUN R -e "install.packages('dbplyr', repos='http://cran.us.r-project.org/')"
RUN R -e "install.packages('magrittr', repos='http://cran.us.r-project.org/')"
RUN R -e "install.packages('purrr', repos='http://cran.us.r-project.org/')"
#Install tools using pip that will be used in the analysis
run pip install awscli
run pip install boto3
run apt-get --yes install jq
COPY SCRIPTS /SCRIPTS
#ARG s3_folder=
# Run
ENTRYPOINT ["bin/bash", "/SCRIPTS/overlap.sh"]
#CMD [ "--output_location", "test_data" ]
Now I am trying to build the docker image on Mac with command:
cd XYZ
docker build . -t XYZ
I am getting following errors on my terminal:
[+] Building 3.0s (6/27) docker:desktop-linux
=> [internal] load build definition from Dockerfile 0.0s
=> => transferring dockerfile: 2.30kB 0.0s
=> [internal] load .dockerignore 0.0s
=> => transferring context: 2B 0.0s
=> [internal] load metadata for docker.io/rocker/r-ver:3.5.0 0.0s
=> CACHED [ 1/23] FROM docker.io/rocker/r-ver:3.5.0 0.0s
=> [internal] load build context 0.1s
=> => transferring context: 10.42kB 0.0s
=> ERROR [ 2/23] RUN apt-get update 2.9s
------
> [ 2/23] RUN apt-get update:
1.122 Ign:1 http://deb.debian.org/debian stretch InRelease
1.143 Ign:2 http://deb.debian.org/debian stretch-updates InRelease
1.152 Ign:3 http://security.debian.org/debian-security stretch/updates InRelease
1.165 Ign:4 http://deb.debian.org/debian stretch Release
1.172 Ign:5 http://security.debian.org/debian-security stretch/updates Release
1.189 Ign:6 http://deb.debian.org/debian stretch-updates Release
1.192 Ign:7 http://security.debian.org/debian-security stretch/updates/main all Packages
1.210 Ign:8 http://deb.debian.org/debian stretch/main all Packages
1.214 Ign:9 http://security.debian.org/debian-security stretch/updates/main amd64 Packages
1.230 Ign:10 http://deb.debian.org/debian stretch/main amd64 Packages
1.335 Ign:11 http://deb.debian.org/debian stretch-updates/main all Packages
1.354 Ign:12 http://deb.debian.org/debian stretch-updates/main amd64 Packages
1.376 Ign:8 http://deb.debian.org/debian stretch/main all Packages
1.396 Ign:10 http://deb.debian.org/debian stretch/main amd64 Packages
1.416 Ign:11 http://deb.debian.org/debian stretch-updates/main all Packages
1.436 Ign:12 http://deb.debian.org/debian stretch-updates/main amd64 Packages
1.459 Ign:8 http://deb.debian.org/debian stretch/main all Packages
1.478 Ign:10 http://deb.debian.org/debian stretch/main amd64 Packages
1.498 Ign:11 http://deb.debian.org/debian stretch-updates/main all Packages
1.518 Ign:12 http://deb.debian.org/debian stretch-updates/main amd64 Packages
1.538 Ign:8 http://deb.debian.org/debian stretch/main all Packages
1.559 Ign:10 http://deb.debian.org/debian stretch/main amd64 Packages
1.580 Ign:11 http://deb.debian.org/debian stretch-updates/main all Packages
1.600 Ign:12 http://deb.debian.org/debian stretch-updates/main amd64 Packages
1.620 Ign:8 http://deb.debian.org/debian stretch/main all Packages
1.640 Ign:10 http://deb.debian.org/debian stretch/main amd64 Packages
1.660 Ign:11 http://deb.debian.org/debian stretch-updates/main all Packages
1.680 Ign:12 http://deb.debian.org/debian stretch-updates/main amd64 Packages
1.700 Ign:8 http://deb.debian.org/debian stretch/main all Packages
1.720 Err:10 http://deb.debian.org/debian stretch/main amd64 Packages
1.720 404 Not Found
1.740 Ign:11 http://deb.debian.org/debian stretch-updates/main all Packages
1.760 Err:12 http://deb.debian.org/debian stretch-updates/main amd64 Packages
1.760 404 Not Found
2.226 Ign:7 http://security.debian.org/debian-security stretch/updates/main all Packages
2.246 Ign:9 http://security.debian.org/debian-security stretch/updates/main amd64 Packages
2.267 Ign:7 http://security.debian.org/debian-security stretch/updates/main all Packages
2.293 Ign:9 http://security.debian.org/debian-security stretch/updates/main amd64 Packages
2.313 Ign:7 http://security.debian.org/debian-security stretch/updates/main all Packages
2.335 Ign:9 http://security.debian.org/debian-security stretch/updates/main amd64 Packages
2.354 Ign:7 http://security.debian.org/debian-security stretch/updates/main all Packages
2.382 Ign:9 http://security.debian.org/debian-security stretch/updates/main amd64 Packages
2.403 Ign:7 http://security.debian.org/debian-security stretch/updates/main all Packages
2.424 Err:9 http://security.debian.org/debian-security stretch/updates/main amd64 Packages
2.424 404 Not Found [IP: 151.101.66.132 80]
2.431 Reading package lists...
2.447 W: The repository 'http://deb.debian.org/debian stretch Release' does not have a Release file.
2.447 W: The repository 'http://security.debian.org/debian-security stretch/updates Release' does not have a Release file.
2.447 W: The repository 'http://deb.debian.org/debian stretch-updates Release' does not have a Release file.
2.447 E: Failed to fetch http://deb.debian.org/debian/dists/stretch/main/binary-amd64/Packages 404 Not Found
2.447 E: Failed to fetch http://security.debian.org/debian-security/dists/stretch/updates/main/binary-amd64/Packages 404 Not Found [IP: 151.101.66.132 80]
2.447 E: Failed to fetch http://deb.debian.org/debian/dists/stretch-updates/main/binary-amd64/Packages 404 Not Found
2.447 E: Some index files failed to download. They have been ignored, or old ones used instead.
------
Dockerfile:12
--------------------
10 |
11 | #Install necessary tools onto debian system
12 | >>> run apt-get update
13 | run apt-get --yes install vim
14 | run apt-get --yes install less
--------------------
ERROR: failed to solve: process "/bin/sh -c apt-get update" did not complete successfully: exit code: 100
I tried to install required dependencies with brew but does not help.
I know I need to change something related to Debian but was not been able to find that.
Internet is not the issue. It seems the issue of Debian with Mac, but I am unable to figure it out.
I would appreciate any advice on this issue. Thanks.
