asbio is a collection of statistical tools for biologists, constituted as a package for use in the R environment
To provide a collection of statistical tools for biologists to use in the R environment, Ken Aho created the asbio package.
Questions tagged [asbio]
8 questions
2
votes
1 answer
Write results in table to one row in R
I have made a Kappa statistic {Asbio}.
library("asbio")
reference<-c("hi","low","low","hi","low","med","med")
class1<-c("hi","hi","low","hi","med","med","med")
Kappa(class1,reference)
so the results is:
$ttl_agreement
[1]…
maycca
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2
votes
2 answers
R package for calculating partial coefficient of determination?
Anyone know of an R package for calculating partial R^2 in multiple regression? I've tried the command partial.R2 from package asbio, but it is giving error messages even with the example from supplied documentation.
Many thanks.
Thomas
- 2,484
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1
vote
1 answer
Tidyverse solution to grouping, and looping through dataframe to perform dunn.test
I have an example dataframe below.
example.df <- data.frame(
species = sample(c("primate", "non-primate"), 50, replace = TRUE),
treated = sample(c("Yes", "No"), 50, replace = TRUE),
gender = sample(c("male", "female"), 50, replace = TRUE),
var1…
jaydoc
- 79
- 1
- 7
0
votes
0 answers
asbio package in R 3.5.3 Error : object 'hcl.colors' is not exported by 'namespace:grDevices' ERROR: lazy loading failed for package 'asbio'
What's happen with asbio instalation here in R-3.5.3? Please.
There is a binary version available but the source version is later:
binary source needs_compilation
asbio 1.6-1 1.7 FALSE
installing the source package…
0
votes
1 answer
Function tukey.add.test (asbio) with other package
usually I use the tukey.add.test from the asbio package in order to check interaction between treatmest and block in ANOVA RCBD, the package is now archived so I can no longer use this function or anything from the package.
You guys know another…
Daniel Restrepo Masi
- 13
- 3
0
votes
1 answer
Loop a function that returns a list over variables in a dataframe grouped by another variable
As an example dataset
example.df <- data.frame(
species = sample(c("primate", "non-primate"), 50, replace = TRUE),
treated = sample(c("Yes", "No"), 50, replace = TRUE),
gender = sample(c("male", "female"), 50, replace = TRUE),
var1 = rnorm(50,…
jaydoc
- 79
- 1
- 7
0
votes
1 answer
dplyr, dunn test, Error in dim(robj) <- c(dX, dY) : dims [product 0] do not match the length of object
I am trying to pass a dataset filtered by a variable value to the pairw.kw function from the "asbio" package in R.
example.df <- data.frame(
species = sample(c("primate", "non-primate"), 50, replace = TRUE),
…
jaydoc
- 79
- 1
- 7
0
votes
1 answer
How to compare all possible combinations of objects in R by loop
Suppose I have binary vectors and need to compare their similarily with Kappa function.
library(asbio)
A <- c(0,1,1,1,1,1,0)
B <- c(0,0,1,0,1,0,1)
C <- c(1,0,0,1,1,0,0)
D <- c(1,1,0,0,0,1,1)
E <- c(1,0,0,1,1,0,1)
Kappa(A,B)$ttl_agreement #…
Ladislav Naďo
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