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Questions tagged [mcl]

14 questions
7
votes
5 answers

How Do I Run Sutton and Barton's "Reinforcement Learning" Lisp Code?

I have been reading a lot about Reinforcement Learning lately, and I have found "Reinforcement Learning: An Introduction" to be an excellent guide. The author's helpfully provice source code for a lot of their worked examples. Before I begin the…
kaybenleroll
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1 answer

How can I run an algorithm written for Digitool 4.3 (2003)?

I work on computational music. I have found the ps13 pitch spelling algorithm implemented in Lisp in 2003, precisely "Digitool MCL 4.3". I would like to run this code, preferably on a Linux x86 machine, to compare its results with other similar…
rfs
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2
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1 answer

Trouble with Lisp macros

I'm trying to write a macro in Lisp that re-implements let using itself. This is a trivial exercise which has no practical purpose; however after giving a response to a related question, I realized I should probably learn more about macros. …
Jeff
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2
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0 answers

Implement MCL (Markov Cluster Algorithm) in R for graph data

I'm trying to cluster a graph dataset using Markov Clustering Algorithm in R. I've followed thorugh so many tutorials including this, this and many others. My dataset looks like this: V1 V2 V3 1 0 1 1 2 0 2 1 3 1 2 1 4 2 3 2 5 …
Arpan Adhikari
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2
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1 answer

How to fix GC error in Mac Common Lisp 5.0?

I'm fairly new to Lisp, and I'm trying to run an algorithmic music application on the original MCL 5.0 (not the RMCL version). The program works by incrementally inputting textual representations of music, and learning from the user via an…
Eddie
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1
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2 answers

Increase Minimum Stack Overflow Size in Mac Common Lisp 5.0

I'm relatively new to Lisp (I just know the very basics) and I'm currently trying to run an algorithmic composition program created by David Cope. It runs in MCL 5.0, and I keep getting the following error: Error in process play: Stack overflow on…
Eddie
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1
vote
1 answer

What parameters can I play with using mcl?

I am clustering undirected graphs using mcl. To do so, I have choose a threshold under which nodes are connected, a similarity measure for each edge and the inflation parameter to tune the granularity of my graph. I have been playing around with…
bigTree
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1
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1 answer

Selecting parameters with Markov Cluster Algorithm

I am doing clustering using mcl. I am trying to "optimize" the clustering with respect to a quality score by tuning the inflation parameter I and a couple of other parameters I introduced. I have questions with respect to this optimization: 1)…
bigTree
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0
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0 answers

MCL Designer - Loop through a record

hopefully there's someone here who works with MCL-Designer. I am using a loop to insert into the db file that goes through the .dat file record by record and inserts it into the database one by one. The problem is that I have 200 records and this…
Sina
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0
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2 answers

Running RMCL (Lisp) on WIndows

Is there ANY way to run RMCL/MCL on Windows? I have a lot of code written for RMCL that needs to interact with a Windows program. Right now we do this by communicating over the network, but that seems to be too slow. I tried PearPC several months…
Jeff
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0 answers

source code in c# for certificateless cryptography (mCL-PKE)

may I ask for some help on the source code for mCL-PKE in C#? I have seen a few papers that introduce the concept for proposed cloud sharing system, but I still have not found any of the source code yet for it seems this concept is quite new. I'm…
Hitsugaya
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0
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1 answer

Keeping instances IDs during mcl clustering

I am trying to cluster points using mcl. The points take indices ind (e.g ind= [4,54,3,etc]). I converted my graph to .abc format and applied mcl to this file (following the instructions provided by micans). The output gives me clusters using the…
bigTree
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0
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1 answer

Graph analysis using mcl and helper programs

I am trying to cluster data using the implementation of the Markov Clustering (mcl) algorithm at micans.org . I read in a description of the algorithm that it was possible to assign one element to several clusters. How can I do that? So far, I can…
bigTree
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1 answer

Graph analysis using mcxquery

I am clustering and analysing graphs using mcl. I'm not familiar with graph theory and I read about the function mcxquery. It is said in the doc that: " The main use of mcxquery is to analyze a graph at different similarity cutoffs. Typically this…
bigTree
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