Stack Overflow
Stack Overflow

Questions tagged [pls]

Partial Least Squares regression is a statistical method used to find the fundamental relations between two matrices.

84 questions
6
votes
2 answers

Partial Least Squares Variance Explained by components in sklearn

I am trying to perform a PLSRegression using the code from sklearn and I want to keep with those components that explain some level of variance, like in PCA. Is there a way to know how much variance is explained by each component in PLS
user2043236
  • 71
  • 1
  • 4
3
votes
1 answer

.contains doesnt work like i thought it would Flutter/Dart

I am very new to Flutter and I run into a Problem. I want to check if the List: items, contains the word Hey and I know it does. So I wrote: if(items.contains('Hey')) to check. But it seems to skip the if part and only returns the else part. I wrote…
user13957100
3
votes
1 answer

R with parallel & pls - How to handle non-terminating Rscript processes in Windows

I want to run multiple partial least squares models in R and am trying to take advantage of the parallel package. However, after running my code, I can see instances of Rscript in my task manager that do not terminate unless I close RStudio. These…
Pulpy_T
  • 43
  • 2
2
votes
1 answer

Why do PLS regression coefficients with R [pls] differ with those from other R packages?

Out of curiosity, I am trying to figure out why the PLS regression coefficients obtained with pls differ from the coefficients obtained with plsRglm, ropls, or plsdepot which all provide the same results. Here is some code to start with. I have…
user2165907
  • 1,401
  • 3
  • 13
  • 28
2
votes
2 answers

Pygame Character wont move left or right

In my below code using PyGame, the character won't move left or right and the bullet won't shoot. I'm not sure what's causing this. It works without the whole start menu with buttons concept so I was wondering if that is the issue? import…
Zach C
  • 71
  • 1
  • 10
2
votes
1 answer

How to get y variance explained from a pls model

I have calculated a PLS model with the "PLS" package, and I want to plot the Y variance explained. I have tried looking through the variable created, but I'm unable to find anything related to it. I can however find X variance explained and total X…
Allan
  • 39
  • 6
2
votes
0 answers

Correlation loading plot from PLSR with observations using ggplot2

I am investigating the correlation between sensory data and chemical measurements using PLS regression from the pls package. Ultimately, I want to display the results in a correlation loading plot as illustrated by the example below. So far I…
Drosof
  • 191
  • 4
  • 16
2
votes
1 answer

How R2 and RMSE are calculated in cross-validation of pls R

I am doing partial least square regression with the pls R package of Mevik (2007). The model with 10 fold cross-validation is as following: pls.fa <- plsr(FA ~ ., ncomp = xcomp,scale = TRUE, validation = "CV", segments = 10,jackknife =TRUE,…
Phuong Ho
  • 67
  • 1
  • 6
2
votes
1 answer

Apply PLSDA model to predict another data?

I am developing a discriminant model using PLSDA (mixOmics package, the model works well by external validations. To do external validation, I use the predict() function. However, suppose now I have to give this prediction equation/model to my…
hn.phuong
  • 835
  • 6
  • 15
  • 24
1
vote
0 answers

Variables in 6 components PLSR using pls package in R?

My mentor asked me to use PLSR in R to analyze some data he had sitting around. I used the pls package and created a mvr workspace object using the following syntax: posamodel <- plsr(posa ~ ados_css + sex_info + age_mdevhist_match +…
Dr. Elliot Gavin Keenan
  • 11
  • 1
1
vote
1 answer

why doesn't y_pred = X @ coef_ + intercept_ for sklearn PLSRegression?

I performed partial least squares regression using Python's sklearn.cross_decomposition.PLSRegression using the example data in the sklearn docs. I am surprised that X @ coef_ + intercept_ does not equal Y_pred. Can someone please explain? from…
lddubs
  • 11
  • 2
1
vote
0 answers

Problem implementing Partial Least Squares Regression

I’m trying to implement the Partial Least Squares Regression model in R using the pls package. The following data frame represents my data, where I have two response variables and three explanatory variables. library(pls) df <- data.frame(x1 =…
aa3ls
  • 115
  • 4
1
vote
1 answer

Get the proportion of the variance explained in a plsda with recipes

I try to compute the proportion of the variance explained by each component in a PLSDA, using the tidymodels framework. Here's the "gold standard" result with the mixOmics package: library(mixOmics) mix_plsda <- plsda(X = iris[-5], Y =…
abichat
  • 2,317
  • 2
  • 21
  • 39
1
vote
0 answers

impute missing data using Niplas algorithm (PLS) in python

I have an array with values between 0 - 255 and one missing (nan), its shape is (27, 36). I tried to impute the missing data using the Nipals algorithm. After searching I found that there is a PLS Regression(). For the PLS regression method, it…
Soufyane Hedidi
  • 77
  • 1
  • 5
1
vote
0 answers

Error in eval(predvars, data, env) : object ' ' not found in R pls()

I've seen this question come up a lot but have yet to find a satisfactory solution, particularly for my case. I am running partial least squares regression in R using pls() package, and would then like to calculate root mean square error of…
Alex Tétrault
  • 11
  • 2
1
2 3 4 5 6