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Questions tagged [rstudioapi]

14 questions
6
votes
2 answers

Run selected Rmd chunks in a single command

I'm experimenting with Rmd Notebooks, and I'm stuck on something that seems like it should be possible but I cannot figure out a solution at all. Basically, I would like a functional way to run selected Rmd chunks without compiling with knitr. So I…
plcefrmyhd
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3
votes
0 answers

password in odbc connection in RShiny

In my shiny application, in global.R I have defined an odbc connection as follow : con <- dbConnect(odbc(), DSN = 'abc', Database = 'xxx', UID = rstudioapi::askForPassword("Database user"), …
Haribo
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3
votes
3 answers

How to run another Rscript after several R jobs running in parallel are done?

The arrangement on how I need to run my scripts is first to run the 4 R scripts in parallel using the rstudioapi::jobRunScript() function. Each of the scripts that is running in parallel does not import anything from any environment but instead…
Denelle
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2
votes
2 answers

How to use indentation with `rstudioapi::insertText`

I have a string that I want to paste with indentation into RStudio using the {rstudioapi}. Here is a simple test string: test_str <- "for (i in seq_along(x)) {\nout[[i]] <- sum(x[[i]])\n}" cat(test_str) #> for (i in seq_along(x)) { #> out[[i]] <-…
TimTeaFan
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2
votes
1 answer

How to style output in RStudio Markers tab

The help of ?rstudioapi::sourceMarkers states: Note that if the message field is of class "html" (i.e. inherits(message, "html") == TRUE) then its contents will be treated as HTML. However, when running the following Code, the text is evaluated as…
mnist
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1
vote
0 answers

Test if active document in Rstudio is RMarkdown

I want to add a small function to my RStudio AddIn which extracts all chunks from an Rmarkdown document, does some transformation and displays it as new editor window in RStudio. Basically, that will be a thin wrapper around knitr::purl. The…
thothal
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1
vote
0 answers

RStudioapi AND RMarkdown not working together

The following code runs nicely in the console or from an .r-file: library(rstudioapi) thisisthepathvariable <- rstudioapi::selectDirectory(caption = "Select path") A dialog box opens, where I can select a path, this path is saved to the variable…
Aku-Ville Lehtimäki
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1
vote
1 answer

in RStudio given a package and addin name, get the function that is called

Here are some of my addins : For example, I'd like to know programmatically what function is called by "reprex" for the addin "Reprex selection". If I go to the repo and browse to "reprex/inst/rstudio/addins.dcf" I can see that it is…
moodymudskipper
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0
votes
0 answers

Correct use of resourceLimits argument in rstudioapi::launcherSubmitJob

I have an issue when trying to use launcherSubmitJob with the resourceLimits argument: rstudioapi::launcherSubmitJob( name = "testcoresetting", cluster = "Local", command = "R", args = "-e print('hi')", resourceLimits =…
Kobus
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0
votes
0 answers

rstudioapi randomly removes text when used in a snippet

I am creating a snippet that automatically takes the name of the function defined in the line below, and creates a roxygen2 documentation where the title is printed "nicely". I have defined the following snippet: snippet doc `r editor <-…
Karl
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0
votes
0 answers

using rstudioapi in devtools tests

I'm making a package which contains a function that calls rstudioapi::jobRunScript(), and I would like to to be able to write tests for this function that can be run normally by devtools::test(). The package is only intended for use during…
lost
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0
votes
0 answers

Set working directory to file location in R

I have a folder, say program, which contains all my scripts, data, etc: main.R src/ other_file_1.R other_file_2.R data/ some_dataset.csv output/ stuff.txt other_stuff.png logs/ Readme.txt The person who receives my folder, opens it and…
IDK
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0
votes
0 answers

Rstudio Terminal Output to Object

I am using the rstudioapi package to run a command in the Rstudio terminal, like so: myTerm <- rstudioapi::terminalCreate() rstudioapi::terminalSend(myTerm, "echo Hello\n") This gives me the following in the Rstudio terminal: user@devicenum:~$ echo…
Hlachma1
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0
votes
1 answer

Having trouble running Shiny app script for mini meta analysis

I'm trying to load a script from a seminar on meta analysis, which supposedly gives you an app/tool to run meta analysis. The script looks like…
Shawn Hemelstrand
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