MongoDB has two built-in options for aggregating data - the aggregation framework and map-reduce.
The aggregation framework is faster (executing as native C++ code as opposed to a JavaScript map-reduce job) but more limited in the sorts of aggregations that are supported. Map-reduce is very versatile and can support very complex aggregations but is slower than the aggregation framework and can be more difficult to code.
Either of these would be a good option for near real time aggregation.
One further consideration to take into account is that as of the 2.4 release the aggregation framework returns a single document containing its results and is therefore limited to returning 16MB of data. In contrast, MongoDB map-reduce jobs have no such limitation and may output directly to a collection. In the upcoming 2.6 release of MongoDB, the aggregation framework will also gain the ability to output directly to a collection, using the new $out operator.
Based on the description of your use case, I would recommend using map-reduce as I assume you need to output more than 16MB of data. Also, note that after the first map-reduce run you may run incremental map-reduce jobs that run only on the data that is new/changed and merge the results into the existing output collection.
As you know, MongoDB doesn't support triggers, but you may easily implement triggers in the application by tailing the MongoDB oplog. This blog post and this SO post cover the topic well.