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In Python, I need to visualize a pairwise similarity matrix in a Graph. I want the nodes which are closer to be visualized by a closer distance. What I need is exactly what is mentioned in this link (Drawing a graph or a network from a distance matrix?) , but I get the following error, even if I install the package:

'requires pygraphviz ', 'http://networkx.lanl.gov/pygraphviz ', '(not available for Python3

Thanks,

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Arash
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  • It looks like you have an old version of pygraphviz; if you look at the download page (https://pypi.python.org/pypi/pygraphviz) it is compatible up to Python 3.4 – Hugh Bothwell Dec 12 '14 at 02:38
  • The website for general pygraphviz information is http://pygraphviz.github.io/ – Aric Dec 13 '14 at 15:17
  • Thanks guys, there is a single version of pygraphviz in the website, while the other download links give you the link to download the different Python version, not different version of pygraphviz, isnt it? – Arash Dec 16 '14 at 04:23

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