Please, how can I get "GraphClusterAnalysis" package installed? I am trying to use the "Highly connected sub graphs" (HCS) clustering algorithm for my data. I have tried to use install.packages() for the installation but I keep getting: package ‘GraphClusterAnalysis’ is not available (for R version 3.0.3).
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1What makes you think this package exists? Upon cursory look at the google, nothing close to this comes up. – Roman Luštrik Aug 03 '17 at 12:59
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It was mentioned in : https://stackoverflow.com/questions/29093381/hcs-clustering-throwing-function-nodes-for-signature-numeric-error/45484542#45484542 Notes on Graph clustering also mentioned it as a package that contains HCS clustering and other graph clustering techniques: https://www.csc2.ncsu.edu/faculty/nfsamato/practical-graph-mining-with-R/slides/pdf/Graph_Cluster_Analysis.pdf – Eseosa Oshodin Aug 03 '17 at 13:54
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I was able to use a method called "highlyConnSG()" for the HCS clustering algorithm which I retrieved after installing "RGBL" and "graph" packages from source "https://biconductor.org/bioLite.R". So to install those packages, type in the R environment command line:
source("https://biconductor.org/biocLite.R")
biocLite("RBGL")
biocLite("graph")
Eseosa Oshodin
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As far as I can see, this is a library, written by the authors of the book ( https://www.csc2.ncsu.edu/faculty/nfsamato/practical-graph-mining-with-R/PracticalGraphMiningWithR.html ).
Also on this page is provided the link to the archive with this library itself (here is the link: https://www.csc2.ncsu.edu/faculty/nfsamato/practical-graph-mining-with-R/R-code/GraphClusterAnalysis.zip ).
So you can load this library and after that you can try to install the library from source. Here is the stackoverflow question about how to do it: How do I install an R package from source?
Nevertheless, as for me I wasn't successful in installing it from source.
Fabien
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