Questions tagged [cromwell]
4 questions
2
votes
2 answers
Management System (Cromwell vs Nextflow) would be better for the optimization of job execution time?
Which one of the two Management System (Cromwell vs Nextflow) would be better for the optimization of job execution time?
Google Kubernetes(GKE) is used for scheduling and monitoring the jobs.
From what I understood it is possible to integrate both…
Denisa Buzan
- 41
- 5
1
vote
1 answer
liquibase.lockservice.StandardLockService.waitForLock
related: Issue on github: https://github.com/broadinstitute/cromwell/issues/7009
I'm using a bioinformatics java program named cromwell (https://github.com/broadinstitute/cromwell/) which, as far as I understand, uses liquibase and hsqldb to store…
Pierre
- 34,472
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0
votes
1 answer
Bash: "syntax error near unexpected token" that's a valid token
I have the following bash code in a script file:
if [ 'false' == 'true' ]
then
write_map() >> 'groups.txt'
Groups='groups.txt'
fi
When I try to run the script, I get this message from bash, and nothing is run:
syntax error near…
Greg Dougherty
- 3,281
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0
votes
1 answer
How do I tell cromwell and womtool what WDL version to use?
I find lots of references to how cromwell supports the development version of WDL. I find people talking about running cromwell using the development version of WDL.
What I can not find anywhere is instructions on how to do this.
For example:
$…
Greg Dougherty
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