Questions tagged [wdl]
3 questions
1
vote
1 answer
Activate conda environment in docker and using image in WDL
I am developing dockerfile where i need to activate conda environment(working fine)
Dockerfile:
FROM continuumio/miniconda3
WORKDIR /app
# Create the environment:
COPY environment.yml .
RUN conda env create -f environment.yml
# Make RUN commands…
Manish
- 3,341
- 15
- 52
- 87
0
votes
1 answer
Bash: "syntax error near unexpected token" that's a valid token
I have the following bash code in a script file:
if [ 'false' == 'true' ]
then
write_map() >> 'groups.txt'
Groups='groups.txt'
fi
When I try to run the script, I get this message from bash, and nothing is run:
syntax error near…
Greg Dougherty
- 3,281
- 8
- 35
- 58
0
votes
1 answer
How do I tell cromwell and womtool what WDL version to use?
I find lots of references to how cromwell supports the development version of WDL. I find people talking about running cromwell using the development version of WDL.
What I can not find anywhere is instructions on how to do this.
For example:
$…
Greg Dougherty
- 3,281
- 8
- 35
- 58