Stack Overflow
Stack Overflow

Questions tagged [zenodo]

general-purpose open-access repository operated by CERN

general-purpose open-access repository operated by CERN (https://zenodo.org/)

12 questions
5
votes
1 answer

How to update the version in Zenodo?

I have released a Release v1.0.0 on github. And got its DOI in Zenodo. But now I have added some scripts and released v1.0.1. But when I check it in Zenodo, it still shows v1.0.0. How can I update this version and get DOI? The repository is…
Yujie
  • 395
  • 2
  • 12
2
votes
1 answer

CrossRef Rest API with Zenodo DOI

Is it possible to get the metadata of a publication in Zenodo using the CrossRef Rest API? For instance, calling https://api.crossref.org/works/10.5281/zenodo.2594632 returns SyntaxError: JSON.parse: unexpected character at line 1 column 1 of the…
Gorka
  • 1,971
  • 1
  • 13
  • 28
2
votes
1 answer

“ERROR 429: Too Many Requests.” occurs when using wget to download big file (15G) from Zenodo

I want download the LoDoPaB-CT dataset from Zenodo from here. The 'test' and 'validation' data have been successfully downloaded. But when downloading the train data, which are very large. I always get the error ERROR 429: Too Many Requests after…
ToughMind
  • 987
  • 1
  • 10
  • 28
2
votes
1 answer

How to template Zenodo auto release archive

I would like to use Zenodo to archive next releases of my project. The project repository is on GitHub. I configured connection from Zenodo to GitHub and when I'm creating next release it is automatically stored in Zenodo. But: description is…
Grzegorz Bokota
  • 1,736
  • 11
  • 19
1
vote
0 answers

Creating a Dataframe from Zenodo zip file with multiple CSVs about Spotify

I am trying to make a dataframe that combines all the CSVs from a zip with spotify data from zenodo. The zip is the charts.zip from here: https://zenodo.org/record/4778563 . I have tried lots of things, but none of them work. The first code I tried…
newprogeman
  • 31
  • 3
1
vote
1 answer

Include tarball instead of zip file from Github in Zenodo

I maintain a few (Unix) repositories on Github where I autolinked the releases to Zenodo. It turns out that Zenodo only takes the Zip files, not the tar balls. In my case this is bad, since the zip files mess up symbolic links at least with the GUI…
olebole
  • 521
  • 4
  • 17
1
vote
0 answers

How to create account in Zenodo from command line?

I am using Zenodo for sharing the dataset for open science. I am uploading dataset using commands from https://github.com/jhpoelen/zenodo-upload to automate the task i.e. ./zenodo_upload.sh [deposition id] [filename] However, I want to automate the…
Exploring
  • 2,493
  • 11
  • 56
  • 97
1
vote
0 answers

Formatting pandas dataframe to publish to Zenodo description

I am using the Zenodo REST API to upload data and I would like to include a table in the description. The website states description attribute can be html. My metadata is stored in a pandas dataframe, so I first tried using the to_html()…
kungphil
  • 1,759
  • 2
  • 18
  • 27
0
votes
1 answer

How to specify multiple roles of a contributor on Zenodo

I am preparing a data deposit for Zenodo, in which most contributors fulfilled multiple roles. Do I really have to add each contributor multiple times, or is there a different way of adding multiple roles to a single contributor?
Rainer
  • 8,347
  • 1
  • 23
  • 28
0
votes
1 answer

Download Data from HPC to Zenodo Directly

I am ssh'd into an HPC system, and I have a bunch of old data on there I would like to store on Zenodo. However, the only solution I have found so far is to create a Github repo, commit the data to said repo, then transfer the data from the Github…
mathishard.butweloveit
  • 115
  • 1
  • 6
0
votes
1 answer

How can I query Zenodo's related identifiers fields?

The Zenodo open data repository offers a web-based query interface with a sophisticated query language. However, I can't get queries for related identifiers (e.g. a data set that supplements a GiHub repository) to return anything. For example, for…
Diomidis Spinellis
  • 18,734
  • 5
  • 61
  • 83
-1
votes
1 answer

Adding Spotify Data from zenodo in a DataFrame

I want to add all the data from charts.zip from https://doi.org/10.5281/zenodo.4778562 in a single DataFrame. The data consist of a file per year that contains multiple CSVs. I made the following code: header = 0 dfs = [] for file in…
man0s
  • 58
  • 6