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Questions tagged [itk]

ITK is an open-source, cross-platform system that provides developers with an extensive suite of software tools for image analysis. SimpleITK is a simplified layer built on top of ITK, intended to facilitate its use in rapid prototyping, education, interpreted languages.

ITK is an open-source, cross-platform system that provides developers with an extensive suite of software tools for image analysis. Developed through extreme programming methodologies, ITK employs leading-edge algorithms for registering and segmenting multidimensional data. The goals for ITK include:

ITK:

  • Supporting the Visible Human Project.
  • Establishing a foundation for future research.
  • Creating a repository of fundamental algorithms.
  • Developing a platform for advanced product development.
  • Support commercial application of the technology.
  • Create conventions for future work.
  • Grow a self-sustaining community of software users and developers.

SimpleITK:

  • Provides a simplified, easy-to-use, procedural interface without templates
  • Is distributed under an open source Apache 2.0 License
  • Binary distributions for Python and Java

Links

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Where can I find the SimpleITK documentation and reference information?

I am interested in trying to use SimpleITK to solve my imaging problem. Can you please tell me where the documentation and training materials are?
Hans
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CMake error - cmTryCompileExec has stopped working (VTK)

Hello I am trying to compile VTK and ITK with CMake under Windows 8. ITK compiled perfectly, but when I try to deal with VTK by CMake I get error cmTryCompileExec has stopped working. How can I solve this problem? My version of CMake is 2.8.12.1
Michal_LFC
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CMake Xcode generator uses no longer supported options

I'm trying to make a Xcode project from the Insight Toolkit (ITK, itk.org). I issued the following command into the terminal: ccmake -DCMAKE_C_COMPILER=/Applications/Xcode.app/Contents/Developer/usr/bin/gcc…
Paul
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How to implement digitally reconstructed radiograph (DRR) in python

Looking for reference code, preferably in python for generating an XRAY from CT. This should model as much of the following factors: Attenuation (LUT) Focal point XRay beam shape and angle XRay energy (keV) I am already familiar with the…
kirillpe
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Complex shapes recognition

I need to complete the demo project which aims to recognize teeth on the xray image. I'm not familiar with the topic and I'm not sure which approach would be preferrable in this case. (I was thinking of the texture segmentation - but this is just an…
danyloid
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Problems running openGL in a container

I am trying to containerize a QT-based GUI application (specifically, ITK-SNAP) with X11 forwarding. When I build an image (let's call it itk-snap:3.8) with the following Dockerfile # 16.04 because https://askubuntu.com/a/895903 FROM…
Tim
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ITK: Cannot find ITKConfig.cmake

I’ve been trying to set up ITK on a new PC and have run into a problem when I go to run CMake on a project. I downloaded ITK 4.8.2, extracted it, configured with CMake and generated as always. However, this time CMake emitts the following…
Jay T
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How do I use an ITK class in Python

I have written a class using ITK in CPP which reads all files in a directory and then averages them. I would like to use this class in a pipeline constructed using Python. I had previously tried to use Swig to wrap template code but according to…
scap3y
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vector of 8-bit unsigned integer is not supported

I am trying to apply CannyEdgeDetectionImageFilter on a .bmp image using Simple-itk managed dll. here is my code: itk.simple.Image image1= SimpleITK.ReadImage("Input.bmp"); ImageFileReader read = new…
Shikha
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ITK - Calculate texture features for segmented 3D brain MRI

I'm trying to calculate texture features for a segmented 3D brain MRI using ITK library with C++. So I followed this example. The example takes a 3D image, and extracts 3 different features for all 13 possible spatial directions. In my program, I…
blackbishop
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Why does the Python ITK PyBuffer not accept my numpy array?

I am using python 2.6 with ITK wrappers (from PythonXY 2.6.6.2). I am trying to send a 3D image from numpy/scipy to itk for processing. import itk imageType = itk.Image.F3 buf = scipy.zeros( (100,100,100), dtype = float) itkImage =…
Stiefel
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How to factor the ITK CenterOfRotationPoint in an affine transformation matrix?

We are using the registration algorithm of ITK but we only want the affine transformation matrix and not directly apply the registration. In a previous issues we already solved a misunderstanding regarding the image/transform orientation: How to get…
Spenhouet
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CMake is not able to link to vcpkg library

I installed a new library in vcpkg, i.e, ITK and now I am trying to compile a very first code example available in its guide, I installed it via vcpkg so I skipped the installation part(provided in that guide) and immediately created a new cmake…
Mohit
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What direction do the DICOM instance numbers grow along?

By direction I mean for example from a patient's head to bottom or from his bottom to head. The CHEST CT scans I have seen so far indicates that Instance Number 1 slice is usually the first one down from the upper part of the body but I don't know…
user1206899
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SimpleITK - how to get maximum and minimum intensity in Image?

I have some DICOM images. I want to rescale them using IntensityWindowingImageFilter, but first, I need to know initial values of maximum and minimum intensities. Right now, I am building WPF UI, with which I want to have some sliders to allow user…
Paweł Mach
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