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I am newbie to Quartus. I have tried both versions 17 and 13.1 and faced a similar problem; I couldn't simulate the block-diagram I had designed. In the old version I got an error saying path to ModelSim is not set correctly, while I wanted to use ModelSim-altera instead, and *-altera's path was set. The newer version expresses cuter reactions :))

Error (199000): Run Analysis and Synthesis with top-level entity name "HW1" or run I/O Assignment Analysis before running the EDA Netlist WriterError: Quartus Prime EDA Netlist Writer was unsuccessful. 1 error, 0 warnings

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Before running functional simulation, I tried to click buttons "Start Analysis and Synthesis" and "Start Analysis and Elaboration." After that, I faced a problem mentioned in this thread. And the answer was there. Hurray