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Questions tagged [gephi]

An interactive visualization and exploration platform for all kinds of networks and complex systems, dynamic and hierarchical graphs.

The Open Graph Viz Platform

Gephi is a tool for people that have to explore and understand graphs. Like Photoshop but for data, the user interacts with the representation, manipulate the structures, shapes and colors to reveal hidden properties. The goal is to help data analysts to make hypothesis, intuitively discover patterns, isolate structure singularities or faults during data sourcing. It is a complementary tool to traditional statistics, as visual thinking with interactive interfaces is now recognized to facilitate reasoning. This is a software for Exploratory Data Analysis, a paradigm appeared in the Visual Analytics field of research.

Its homepage is at https://gephi.org/

415 questions
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How to create Gephi network graphs from Python?

I have just found out about GephiStreamer. https://pypi.python.org/pypi/GephiStreamer Using this package one can send instructions from python to Gephi to create nodes and edges in Gephi. # Create a node with a custom_property node_a =…
user5287246
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How to store a networkx graph for visualizing in Gephi?

I am working on a pagerank algorithm using Networkx module in Python. I have a dictionary of lists, where key of the dictionary is the Title of the page and its value is all the Titles referenced through that page. So in order to create a…
Suyash
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Labels only for nodes with a minimal weight of x in Gephi

I have a network with ca. 3500 nodes and ca. 10000 edges. I'd like to show only labels for nodes with a certain weight, for example all with more than 100 edges. How can I do that?
CH_
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Gephi not showing Nodes & Edges on graph

It's been awhile since I've used Gephi, but I used to be pretty familiar with everything in v 0.8.xx. I just loaded node & edge files into a brand-new installation of v0.9.0. They show up fine in the data lab & the context menu shows they exist.…
CCapra
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Avoid Label overlapping in Gephi

I have downloaded Gephi and I am using it presently in Windows. I have made the graph of my Facebook Network which has about 469 nodes and the problem I am facing is that I can't see the labels clearly. They are overlapping too much. Is there a way…
Vaibhav Agarwal
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Moving multiple nodes with Gephi

I am having a hard time dragging multiple nodes on the screen with Gephi. The multi-select button allows me to select multiple nodes but not move them on the screen. Could this be a system issue (running Ubuntu on Mac)? I have searched the web but…
sandyp
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How can Modularity help in Network Analysis

I have a large network of routers all interconnected in a community network. I am trying to see different ways in which i could analyse this network and gain helpful insights and ways in which it could be improved just by analyzing the graph(using…
user2691659
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1 answer

What is a parallel edge in Gephi and how do I deal with them when importing an edgelist?

When I import my .gexf file, it flags a bunch of parallel edges. I don't know what parallel edges are and why there's an issue with my graph. I'm trying to create a dynamic gephi graph.
goldisfine
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Gephi and NetworkX return different average clustering coefficient for same graph

I calculated average clustering coefficient using both Gephi and NetworkX. For the same graph NetworkX gave 0.2399 while Gephi gave 0.644. Why is it different ? How do NetworkX and Gephi calculate average clustering coefficient ? In case of…
sridhar
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bipartite layout Gephi 0.9.1

my question is awkwardly simple: how do i plot a bipartite graph in Gephi with a layout like the one you see in the attached image? I really am not able to find an appropriate layout in Gephi's options thanks
deltasun
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2 answers

Use JSON file in Gephi

I have a json file containing network data that I'd like to visualize using a network visualization software like Gephi. But Gephi does not accept this type of files. Is there a way to convert the json file or are there any other network…
Gigi
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gephi 0.8.1 issue on Mac X 10.8.2 unable to load libjogl_awt.jnilib

I'm new to JAVA. I'm on Mac OS X 10.8.2. Using gephi 0.8.1. I get: echo $JAVA_HOME /Library/Java/JavaVirtualMachines/1.6.0_33-b03-424.jdk/Contents/Home echo $JDK_HOME /Library/Java/JavaVirtualMachines/1.6.0_33-b03-424.jdk/Contents/Home gephi libs…
chuckfinley
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Pass graph property names to gephi using apoc.gephi.add()

I am streaming graphs from neo4j to Gephi using the apoc.gephi.add(). The method only passes one property of the node as a node label in Gephi. Which is not only desired node label I want. Is there a way to transfer other property as a node label to…
smm
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Change node size gephi 0.9.1

I have looked everywhere but I don't seem to able to get the answer for the latest version of Gephi (0.9.1). All I want to do is change the node size based on its in-degree for all the nodes on the graph. This used to be something I could do with…
Sebastian Zeki
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Gephi 0.9.0 partition panel

I've just started with Gephi using 0.9.0. When I go to the Overview window there is no Partition panel, or anything except the Appearance panel. All the help is based on 0.8.x and the UI seems to have gone through a major overhaul, so nothing online…
user3325003
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